Index

_

__init__() (evoc.clustering.EVoC method) (evoc.EVoC method), [1], [2]

__init_subclass__() (evoc.EVoC class method)

B

bfs_from_hierarchy() (in module evoc.cluster_trees) binary_search_for_n_clusters() (in module evoc.clustering_utilities), [1], [2]

build_cluster_layers() (in module evoc.clustering) build_cluster_tree() (in module evoc.clustering_utilities), [1], [2] build_kdtree() (in module evoc.numba_kdtree), [1]

C

child (evoc.cluster_trees.CondensedTree attribute) child_size (evoc.cluster_trees.CondensedTree attribute) cluster_epsilon_search() (in module evoc.cluster_trees) cluster_layers_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1] cluster_tree_ (evoc.clustering.EVoC attribute) (evoc.clustering.EVoC property) (evoc.EVoC attribute), [1] (evoc.EVoC property), [1]

cluster_tree_from_condensed_tree() (in module evoc.cluster_trees) compute_total_persistence() (in module evoc.clustering_utilities) condense_tree() (in module evoc.cluster_trees), [1], [2] CondensedTree (class in evoc.cluster_trees) create_linkage_merge_data() (in module evoc.cluster_trees)

D

duplicates_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1]

E

eliminate_branch() (in module evoc.cluster_trees) eom_recursion() (in module evoc.cluster_trees) estimate_cluster_similarity() (in module evoc.clustering_utilities) EVoC (class in evoc), [1] (class in evoc.clustering) evoc.cluster_trees module evoc.clustering module

evoc.clustering_utilities module evoc_clusters() (in module evoc), [1] (in module evoc.clustering) extract_clusters_by_id() (in module evoc.clustering_utilities) extract_eom_clusters() (in module evoc.cluster_trees) extract_leaves() (in module evoc.cluster_trees), [1], [2]

F

find_duplicates() (in module evoc.clustering_utilities), [1], [2] find_peaks() (in module evoc.clustering_utilities), [1], [2] fit() (evoc.clustering.EVoC method) (evoc.EVoC method), [1]

fit_predict() (evoc.clustering.EVoC method) (evoc.EVoC method), [1]

G

get_cluster_label_vector() (in module evoc.cluster_trees), [1], [2] get_cluster_labelling_at_cut() (in module evoc.cluster_trees) get_metadata_routing() (evoc.EVoC method)

get_params() (evoc.EVoC method) get_point_membership_strength_vector() (in module evoc.cluster_trees), [1], [2] get_single_cluster_label_vector() (in module evoc.cluster_trees)

I

in_set_parallel() (in module evoc.cluster_trees)

J

jaccard_similarity() (in module evoc.clustering_utilities)

K

knn_graph() (in module evoc.knn_graph), [1]

L

label_propagation_init() (in module evoc.label_propagation), [1] labels_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1]

lambda_val (evoc.cluster_trees.CondensedTree attribute) linkage_merge_find() (in module evoc.cluster_trees) linkage_merge_join() (in module evoc.cluster_trees) LinkageMergeData (class in evoc.cluster_trees)

M

mask_condensed_tree() (in module evoc.cluster_trees) max_lambdas() (in module evoc.cluster_trees) membership_strength_layers_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1] membership_strengths_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1]

min_cluster_size_barcode() (in module evoc.clustering_utilities) module evoc.cluster_trees evoc.clustering evoc.clustering_utilities mst_to_linkage_tree() (in module evoc.cluster_trees), [1], [2]

N

neighbor_graph_matrix() (in module evoc.graph_construction), [1] next (evoc.cluster_trees.LinkageMergeData attribute) nn_dists_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1]

nn_inds_ (evoc.clustering.EVoC attribute) (evoc.EVoC attribute), [1] node_embedding() (in module evoc.node_embedding), [1]

P

parallel_boruvka() (in module evoc.boruvka), [1]

parent (evoc.cluster_trees.CondensedTree attribute) (evoc.cluster_trees.LinkageMergeData attribute)

S

score_condensed_tree_nodes() (in module evoc.cluster_trees) segments_in_branch() (in module evoc.cluster_trees)

select_diverse_peaks() (in module evoc.clustering_utilities), [1], [2] set_params() (evoc.EVoC method) size (evoc.cluster_trees.LinkageMergeData attribute)

T

traverse_upwards() (in module evoc.cluster_trees)

U

unselect_below_node() (in module evoc.cluster_trees)